PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta003634
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NF-YC
Protein Properties Length: 272aa    MW: 30097.3 Da    PI: 6.3959
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-57094PU_refplantGDBView CDS
gnl|UG|Pta#S20498555PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC179.23.8e-56861901102
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                ql+ fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdivp
  Pta003634  86 QLQIFWANQmhdIEQTSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 185
                89*******8888*************************************************************************************** PP

      NF-YC  98 rdelk 102
                rdelk
  Pta003634 186 RDELK 190
                **975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.35E-3378180IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.0E-3799172IPR009072Histone-fold
PfamPF008082.4E-21108171IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEQQAPGQQQ PVMGVVSGPP QMPYGTAPYQ TAQLVAPVAP ASVVGTVQSP GQPASAYPAT  60
AAQLAAQHQL AYQHLHQQQQ QQQQQQLQIF WANQMHDIEQ TSDFKNHSLP LARIKKIMKA  120
DEDVRMISAE APVIFAKACE MFILELTLRS WIHTEENKRR TLQKNDIAAA ITRTDIFDFL  180
VDIVPRDELK EEGLGIPRGP VPVGTPAEAI PYYYVPQQHP AAQVAPPGMI VGKPVDPAMY  240
AQQPRPPVAY MPQQMWPQQQ MPEQSRGPSS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C9e-43721864119HapE
4g91_C9e-43721864119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.18260.0needle| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875193.11e-110PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_015875194.11e-110PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_015875195.11e-110PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ8LCG77e-79NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A0D6QWK91e-149A0A0D6QWK9_ARACU; Uncharacterized protein
STRINGVIT_14s0128g00250.t011e-108(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-76nuclear factor Y, subunit C2